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Thanks for you response. This was in their prospectus.So, what are the chances of being rejected after being included among those 5 students.They have checked all my papers and informed everything is alright.
Btw,I don't think it is special program

it is a masters program of duration 2 years. Thats why I am kind of tensed. I have contacted to admission office and they replied that MEXT scholarship are the process between university and ministry. After they get the result they will inform me and they are expecting it very soon.