1 Yesterday I came/got home after my father came/got home.
Yesterday I came/got home after my father.
(the extra words are unnatural, not wrong.)
2a, 2b, 3a, good
3b slightly unnatural but usable.
4a When I opened the window, I found it was raining.
4b I found it was raining when I opened the window.
Not wrong, but we don't usually use that grammar outside of books. If you're not writing a first-person novel, then other ways are better.
4a' When I opened the window, I saw that it was raining.
4b' I saw that it was raining when I opened the window.
4a'' When I opened the window, it was raining.
4b'' It was raining when I opened the window.
5a ok. Can also be used with 'to' instead of 'for'.
5b When I am busy, I always ask him for help.
Slightly off. Better would be,
5b' When I am busy, I always ask him to help.
6a What are you going to do after you graduate from high school?
6b After you graduate from high school, what are you going to do?
Just like a textbook. But in real life, usually,
6a' What are you going to do after you graduate?
6b' After you graduate, what are you going to do?
7a,7b good
8a,8b more natural if 'are not' is replaced with 'aren't'
9a,9b fine ; 9a is the more natural, 9b is used in contexts where it's important to say 'Before you eat' quickly, like just before a hungry child puts his dirty hands on the food.
10a I'll leave after you come/arrive here.
10b After you come/arrive here, I'll leave.
10a' I'll leave after you arrive.
10b is awkward.
11a I left there before Tom came/arrived.
11b Before Tom came/arrived, I left there.
'came' isn't very natural compared to 'arrived' or 'got there'.
Otherwise ... mostly okay but slightly unnatural.
11a' I left before Tom arrived.
11a'' I left before Tom got there.
11b' Before Tom arrived, I had already left.
11b'' Before Tom got there, I had already left.
12a fine
12b Before my father came/got home, I went to bed.
More generally natural,
12b' Before my father came/got home, I had already gone to bed.
The original 12b can be used but sounds like going to bed was timed purposely to be before the father got home. (Which can happen, e.g., if the child is avoiding a conversation or was up past bedtime but made sure to be in bed before the father got home, etc. etc.)
13a If/When you go to the town, you can eat the food.
13b You can eat the food if/when you go to the town.
13a' When you get into town, you can eat.
13b' You can eat when you get into town.
13a'' If you came/went into town, you could eat.
13b'' You could eat if you came/went into town.
13' and 13'' have very different meanings, though. 13' says 'Wait until you get into town to eat.'
13'' suggests there's nothing to eat where the listener is at, but there's somewhere to eat in town. Use 'came' if the speaker is in town, and 'went' if the speaker is not in town.