Unfortunately, I don't have time to respond to all of your points at the moment (I'll do my best to get to them later, unless Toritoribeさん is able to answer them before me), but I'd just like to point out.
healer said:
It seems that this is an example of Japanese verbs where the definition of "transitive" is not quite the same as that of English transitive verbs.
The subject of a transitive verb does not have to be sentient or possess free will in English either.
In the following sentences:
The ball struck the window, shattering the glass.
The gusting wind knocked over the trash can, spilling garbage everywhere.
..."the ball" and "the wind" are, respectively, subjects of the transitive verbs "struck" and "knocked over". Neither the ball nor the wind have free will, but this does not change the fact that the
grammatical relationship in both sentences is that of subject, transitive verb, and direct object.
This is why you can't simply make assumptions about transitivity and intransitivity based upon meaning and the topic of conversation.
In English, wind can blow (intransitive) or blow/knock something over (transitive).
Likewise, in Japanese, you can have 風が吹く (intransitive) or 風が◯◯を吹き飛ばす (intransitive).
This is why I keep saying you have to pay strict attention to the grammar/structure, not just the meaning in an abstract sense.